Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015831923.1_cds_XP_016504714.1_18123
CDS Infomation

[gene=LOC107822672] [db_xref=GeneID:107822672] [protein=E3 ubiquitin-protein ligase UPL5-like] [protein_id=XP_016504714.1] [location=join(167567..169169,171849..172477,172615..172878)] [gbkey=CDS]
Sequence

ATGCGGAAAGACGAAACTCTCCCTTCCTCCTGTCCTCCGTCAACTCGCATTCAGTTCTTC
GTCCGTTTATTTTCTGGTGTCAACAAAACCCTAGTCCTTCAAGCAGATTCCACCGACACA
GTTTCATCAGTTCACAGAAAAATCGAGTTGATCACCGGAATTCCAGCATTGACGAAGTCT
TTCGGAGTACCAGGAATCCATCAACGGTTAATATACAGAGGTAAACAGCTTCACCTGGAG
CAAACCCTCGCTGGCTGCGATGTACAACACGACGCGAGCTTACAACTCGTCGGGCGAATG
CGAAGCACGCGCCACCCGCTGACGTGGAAGCTGATGAGTGAATTAATTGCAGTCATTTCT
AATAGTACCGAAGGCCGTCTAATTAAGAAGATGCTTAGCAAAATTCTCACAATGACTCCA
AAGGATGAAACTAAATCTGAGGAATATCTTCGAATATTCATCTACTCATCTGTGCCTGCG
CATTTGGTAAAGCTTTATGTCGCTCCTTCTAATTCTGAATTTAATAACAAAGACACAGCT
GATGAATGCATTCGTGAATTCATAAAATTGTGTAAGAAACTATTATCGGATAGCATATAT
GCGCAATGTGTTCATATAGTGTTAGAGTTTTGTAAGCTTCTGAGAGGTGCTGCTGGTGTT
GATGATGCTTTGTATGGCTTTTGTCGGAGTAGTTTAGCGGATATAATGGATTGGTATGAC
ACGGACGCTATGGATGTGTTACCATTGCAGGATTCTTTTCCTTTAGTCCGTGAGTTAGCA
GCTAGGTTATCGTGTACTTTAGAATTGAGTGTTGGATCGGCTGAGTTTGTGGGGTTATCA
TGTAGCGATGTGCATGAGTTTATTGAGTTCATGCATCCTGTAAGGAGTGCATTACTGTGT
CAAGAAGCATTTGATTGTCCGTTCACTTTTCCTTTATTGGAGAAAGGTAACGGTGAAGCA
GGAAGTAAAAGATTTGAGATGCACAATTACAAAGAAAAAATTGAAGGTTTGCATCATATT
TTCTGTGATTTGCTGGACAAATTGGAGCTGTGTTTAGAGAAACTGGAAACCCGACTGGGT
TTGAAAGAGAAAGAAAAAGATGAGCCTAATGTACTCTGTTGGTCTCAGTATCTTGTAATT
CTAGAGGCATTACATAGGATTTCAAAAATGTATAAGGGTTTGGAGGAAGGCTTTTGGAAG
AAGATGAGGCAAAGAAAAGTTTCATTGTGCTTTCTCATAGTTAGACTCTCAAAAAGGTCT
AGAGATTATCAGTGGATTCTTGAGAACAAGAAGATCGTCAATTTTGAGGTAAGGCGGGAT
TTCGCCATGATGATGTTGCGAGAAGGGAGCGGCAAGAATGAGGAACTATATGAGATGCTC
ATTGACAGGTCCCATTTGTTGGAAGAATCATTTGAGTACATTAGACATGCAGGTCCTAGA
GTGCTGGGCCACAATTTATTTTTGAAATTCAAGAACGAAGAAGCTACTGGACCTGGTGTG
GTGAGGGAGTGGTTTTACTTGGTAATTCAAGCCATTTTCAACCCTCAGAATGCTCTCTTT
GTTTCTTGCCCGAAAGACTGTAGAAGGTTTTTCCCAAATCCAGCATCTAAGGTGGACCCA
CTGCACCTTGAGTATTTTGTCTTCGCTGGCAGGATGATTGCATTGGCCTTATTGCATAAA
ATACAAATCAGCATTGTGTTTGATCGCGTGTTCTTTTTGCTACTAGCTGGAGCTTCTGAT
GTTGGTTTATTCTATTTCAAATTAGCTGGAAAGAATATTTCATTGGAAGACATTAAGGAT
GCAGATCCATACTTGTACAGTAGCTGCAAGAAGATACTGGAGATGGATCCGGAGATGGTG
GATCAAGATACTCTAGGCCTGACATTTGCTTGTGAAATTGAAGAATTGGGGTCCAGGAAA
GTGGTTGAGCTTTGCCCCCGTGGGAAAGATACCGTAGTGAACAGTGAGAACAGGAATAAA
TATGTTAATCTTCTTATCCAACACCACTTTGTCACTTCAATTGCTCCGCAGGTAACCCAT
TTTGCTCGAGGTTTTGCCGACATAATTACTCACCCATGGCTCCGAAGATCCTTTTTCCGG
ATCTTAGATCCTGAAGATCTTGACTTGATTCTTCATGGGAGCAAAAGTGATGTTTCTGTA
GAAGATTGGAGAGCACATACGGATTATAAAGGCTACAAAGAAAATGATCCTCAAATATCC
TGGTTTTGGAAGATAGTTACCGGTATGTCTGCTGAGCAGAGAAAGGTGCTTCTCTTCTTC
TGGACGTCAATCAAGTCTCTTCCTGTAGAGGGTTTTGGTGGTTTGGCTTCTAGACTATAC
ATCTATAAAACCTCGGAGTCTTATGATTGCTTGCCTTCCTCGCACACATGCTTCTACCAA
CTGTGTTTTCCTCCTTATCCGTCCATGGATGTAATGCAAAATCGACTTCACATAATCACC
CAAGATCATATTGGTTGCAGCTTTGGTACCGCGTGA

Peptide Sequence

PEP ID

XP_016504714.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Nicotiana tabacum]
Sequence

MRKDETLPSSCPPSTRIQFFVRLFSGVNKTLVLQADSTDTVSSVHRKIELITGIPALTKS
FGVPGIHQRLIYRGKQLHLEQTLAGCDVQHDASLQLVGRMRSTRHPLTWKLMSELIAVIS
NSTEGRLIKKMLSKILTMTPKDETKSEEYLRIFIYSSVPAHLVKLYVAPSNSEFNNKDTA
DECIREFIKLCKKLLSDSIYAQCVHIVLEFCKLLRGAAGVDDALYGFCRSSLADIMDWYD
TDAMDVLPLQDSFPLVRELAARLSCTLELSVGSAEFVGLSCSDVHEFIEFMHPVRSALLC
QEAFDCPFTFPLLEKGNGEAGSKRFEMHNYKEKIEGLHHIFCDLLDKLELCLEKLETRLG
LKEKEKDEPNVLCWSQYLVILEALHRISKMYKGLEEGFWKKMRQRKVSLCFLIVRLSKRS
RDYQWILENKKIVNFEVRRDFAMMMLREGSGKNEELYEMLIDRSHLLEESFEYIRHAGPR
VLGHNLFLKFKNEEATGPGVVREWFYLVIQAIFNPQNALFVSCPKDCRRFFPNPASKVDP
LHLEYFVFAGRMIALALLHKIQISIVFDRVFFLLLAGASDVGLFYFKLAGKNISLEDIKD
ADPYLYSSCKKILEMDPEMVDQDTLGLTFACEIEELGSRKVVELCPRGKDTVVNSENRNK
YVNLLIQHHFVTSIAPQVTHFARGFADIITHPWLRRSFFRILDPEDLDLILHGSKSDVSV
EDWRAHTDYKGYKENDPQISWFWKIVTGMSAEQRKVLLFFWTSIKSLPVEGFGGLASRLY
IYKTSESYDCLPSSHTCFYQLCFPPYPSMDVMQNRLHIITQDHIGCSFGTA

Transcript Sequence

Gene sequence data has not been registered.